That Archelogy Question, Revisited

by John Eddy on December 16, 2008

in Misc Personal, Science, Unrestrained ego, books

This started as a comment to the Archeology Question posed by Dean last Saturday. In order to get to my point I need to flesh out a few things, so please bear with me.  If the topic of our novel and our assorted gyrations in writing it and attempting to write the sequel bore you silly I’ll mercifully save you the extra scrolling by putting the remainder of the post below the fold.

First and foremost, Dean and I didn’t suddenly come to an impasse- we really were at an impasse from the very beginning. I’d agreed to the ending, but I hated it with a passion and spent 2 years trying to talk him out of it, then finally drew the line and just said flat-out I couldn’t do it and that’s where everything stopped. That was really unfair of me in retrospect because I let him believe I was going to do it for two years when I really had no intention of letting it unfold that way. All work on the book halted for about 6 months and we barely spoke to each other during that time.

Finally I took a bunch of disjointed stuff from the Rome/Rufus arc, stitched it together and sent Dean an e-mail telling him the Rome arc was finished and we should just end it there- we did a little back-and-forth and Dean made some changes to what I’d done and we called it quits.

It’s taken me an additional 2 years to reach a point where maybe I can give him what he needs in order to truly finish the story- note that we’re close, but not there yet. That’s what this archeology question seems to be about (not putting any words in your mouth Dean, this is just my impression). Dean needs something absolutely incontrovertible to point to an artificial actor as the cause of Zsallia’s immortality, something that absolutely no one, no mater how mystically inclined they might be, could possible see as anything other than undeniably artificial.

What he appears to be looking for here is some sort of a framework within which a scientist (and I think limiting it to archeology is a mistake, since Zsallia is not an archeological artifact) would say something along the lines of “Having met X out of Y conditions, this cannot be anything other than an artificial phenomenon”. Now I would include in this biologists, organic chemists, geneticists, etc just because any one of them would do the trick.

My question is how dispositive is dispositive enough? I look back at those last two chapters we posted earlier this year and I can see how Dr. Kelso is kind of weasling around the subject, but for me the following seems pretty definitive:

“I can only speculate. Given the way all this seems to interoperate there’s just no way to support the notion of it being a fluke or some infection. This is way too sophisticated for that.”

Zsallia didn’t look like she was listening, but my curiosity was huge, so I asked, “You don’t see anything… supernatural here?”

He made a face. “I’m a scientist, I don’t deal in the supernatural, and nature doesn’t allow paradoxes. These look like interdependent biological phenomena to me.”

“A mutation?” I asked.

He snorted. “Not bloody likely.”

“Some kind of parasite or….?”

“Maybe a symbiotic organism, but nothing we’ve ever…”

Zsallia interrupted suddenly, her voice rather quiet. “You think it is impossible for this to be natural, don’t you?”

“Impossible is a word I don’t throw around lightly,” he replied, suddenly looking cautious, “but if you’re asking my opinion… this is just too neat. It’s something we’ve never seen in nature. Either issue alone, the tumor or the ‘virus’, maybe, but together? And one dependent on the other?” He shook his head. “No. I don’t believe it’s natural. I can’t prove it, but if I were going to bet on it, that would be my choice.”

“I see,” she said, staring at the tabletop. The she looked up at him again and asked, “Am I a human being?” This time her voice was so very quiet I was surprised Kelso even heard it, but he nodded.

“Yes.”

“Just yes? That simple?”

“Yes, that simple. Aside from the thing in your head you have the morphology of a human being, you have the correct number of gene pairs, and they’re the right length. Your anatomy is completely normal. So far I haven’t seen anything beyond that to suggest you’re not human.” He turned to me. “Do you find her sexually attractive?”

I stammered on that one and he nodded, “So you pass the test of our built in human female detector. I’d like to map your entire genome but really, that’s enough for me. What’s going on and why? There are still more questions than answers.”

 Now, whatI’ve agreed to is to make Dr. Kelso more declarative, but in addition we need to makehim a much bigger charachter than he was originally supposed to be. We have to turn him into somebody Zsallia trusts without question, probably by having him answer a few other big question before this one, such as describing just how her regenerative powers work and perhaps pin-pointing her true age. Those are the kind of things we need to consider, in my opinion, in order to get to Revelation and smack Zsallia straight between the eyes with her own humanity.

 Thoughts?

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12.18.08 at 9:23 am

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1 Phelps 12.16.08 at 12:51 pm

Tooling.  You need marks that show that something was worked by tools, rather than being built layer by layer or being deposited together.

2 Phelps 12.16.08 at 12:52 pm

Markings would work, too.  Artisans usually sign their work somehow.

3 jaymaster 12.16.08 at 1:19 pm

"Made in China" would work.

;)

4 J.A. Eddy 12.16.08 at 1:29 pm

We actually were joking about "Another fine product brought to you by…"

Phelps-

Excatly where would tool marks be on a living creature? That’s why I think Archeology is the wrong discipline for this question.

5 Trudy W. Schuett 12.16.08 at 1:54 pm

How ’bout something that’s a perfect square or circle, easily mistaken for a tattoo but not.

6 Eric Rall (Maniakes) 12.16.08 at 2:42 pm

There’s pieces of junk DNA which have been thoroughly studies to reconstruct descent. Junk DNA accumulates mutations at a predictable rate, so you can get a pretty good estimate of how many generations back was the most recent common ancestor of two people by counting the number of differences in their junk DNA. We use Y-chromosome DNA to check specifically for male ancestors and mitochondrial DNA to check specifically for female ancestors.

If Zsallia’s junk DNA is very, very different from any living human tested, that would imply that either her ancestors diverged from the rest of humanity a very long time ago, or her DNA was artificially constructed. You can make the differences arbitrarily large, to imply that the common ancestor would need to be tens or hundreds of millions of years ago, which would be utterly inconsistant with her obvious humanity; this would leave artificial manipulation as the only plausible conclusion.

7 jaymaster 12.16.08 at 2:50 pm

One question I would have is whether whoever placed the “thing” there wanted it known that it was man made (or maybe non-natural is a better word). 

If so, then there could be a marker of some type. Not sure a circle or square is good enough, considering those patterns exist in naturally.  But some kind of recognizable pattern, like Stonehenge or the big dipper or something weird like that. 

Otherwise, it could be more difficult.   If the “thing” contains some kind of organic material that “died” at a certain point in time, you could use carbon dating. Something made from leather or plant fibers or wood would work. 

But if you are dealing with something inorganic like an arrow head, it’s not so straight forward.  They basically have to be dated by their location and depth in the soil.  There are pretty good guidelines for mapping various soil types and depths with age in many locations.  A lot of that info was built up over time from organized digs.  Those ages can be confirmed by carbon dating of organic materials that are found alongside the arrow heads or other inorganic materials.   

There are also tree ring keys for certain locations that have been developed over time. The grain growth patterns on wooden items can sometimes be compared to other trees from that location and sometimes a time period can be determined quite accurately.   

There are well known patterns and materials for arrowheads and other tools that are associated with certain areas and time periods.  But they can sometimes be counterfeited still today by people with the right skills.  So an arrow head alone isn’t a sure thing.

8 J.A. Eddy 12.16.08 at 3:37 pm

I like the idea of using Zsallia’s mitochondrial DNA to at least narrow down her age. Stuff like that is enough in the news that it shouldn’t be too confusing.

Carbon dating is pretty much out of the question, I would think, unless she has a Clovis Point stuck in her body somewhere :) .

I think we are looking at two intertwining pieces of evidence. First, her Mitochondrial DNA indicates she’s extremely old. Second, there must be some sort of biopsy performed on her ‘tumor’, something that categorically identifies it as NOT part of her body.

rambling, here

9 J.A. Eddy 12.16.08 at 3:39 pm

As for your question, Jaymaster, we never answer the question of who or why.  There’s really know way to know, even if Dean and I DO know…

10 jaymaster 12.16.08 at 3:43 pm

  To be honest, the first thing that popped into my head was that Dean was toying around with finding an arrowhead or something like that in her body…

11 Aziz Poonawalla 12.16.08 at 4:14 pm

how about the Brain Thing itself be a symbiote? ie actively alive and instead of nanobots, just its  own version of white blood cells and immune system stuff keeping its host alive?

and how does Kelso rule out a mutation so definitively if he hasnt done a full dna analysis of her genome?

12 J.A. Eddy 12.16.08 at 4:29 pm

It would have to be one hell of a mutation to create what amounts to a new body organ that functions as a get-out-of-jail-free card where death and injury are concerned, don’t you think?

13 Aziz Poonawalla 12.16.08 at 5:07 pm

i guess, that does seem a bit of a leap – though you could always take a right turn and go the Intelligent Design route :)

what about my symbiote idea? email me if you guys want more detail, i have a lot more thought on that.

14 Dean Esmay 12.16.08 at 8:00 pm

One thing I want to clarify: I was deeply disappointed we dumped the original ending, especially because I thought it was deeply tragic and cathartic, especially the desert scene after the dramatic reveal (and I don’t know if John ever put that up online or not, but I think it contains some of our very best writing as a team). But when we couldn’t agree to keep that, or on any obvious alternatives, I also pitched the idea that we table it until further notice and write a much more ambiguous ending to book 1, involving something like Zsallia chickening out at the last minute and simply disappearing on everybody, with our narrator and everybody else wondering where she went and discussing why she did leave and wondering how it would work out for her and what this all meant for humanity and all that rot.

Which would I think have been a bit more satisfying than the way we did end, but would also leave things wide open for a sequel to start pretty damn near anywhere and anywhen we wanted if we ever did figure out where we wanted to go.

John’s stubbornness on refusing to do THAT was what made me so frustrated I just didn’t know what to do.

Creative frictions, they happen. His frustration with me is that I had an ending I loved so much, I pretty much batted aside all his objections for over a year until we got to where we had to take the plunge and he still wasn’t happy. I should have listened more, earlier on, and I did not. ;-)

I was very stubborn in many ways on many other things, such as I’m certain he often wanted to punch me. Yet I think we’re both really proud of what we accomplished together and we really want to go on. We’ve actually got a surprising amount of stuff already in the can that’s ready to be fleshed out, and ideas for more, but, if we can’t agree on a mutually satisfying ending then we’re never going to finish because, basically, we’re both stubborn bastards. ;-)

When we do book 2–and I’m increasingly thinking we will–I’m not sure if her pet Tyrannosaur, Skippy, will ever appear, but he just might. (That’s an in-joke just between John and I.)

15 Dean Esmay 12.16.08 at 8:07 pm

I don’t have time tonight to read the whole of this thread, so I may sound like I’m blowing some people off, but I’m frickin’ busy–too busy to be writing this but I am because my partnership with John means a lot and that he’s willing to go public and ask for help on this also means a lot to me. We were both extremely close-to-the-vest and hush-hush on this project for the longest time. NO ONE knew what we were doing with Methuselah’s Daughter or even that 3500years.com was US. (Well, the web site was 95% John, but it was merely ("merely!") the backbone of a much larger project we were both intensely involved in for about two years.) We hoped the secrecy would help us get attention when we went public, but we were wrong. We also worried as newbie authors together that people would ask all sorts of weird questions or freak out on us about things that, well, basically, they never did. But it’s real hard when you’ve got something creative you’re working on that you love dearly, and then you just come out in public and spill everything and ask people what they honestly think.

Yet that’s the real power of the blogosphere: when you just talk to people and just ask for help, people come through for each other. Secrecy and fear have their place, but they’re often counterproductive. Clearly, a lot of you folks liked this book and this concept, and now that we’re published we don’t have to fear someone’s going to "steal" our ideas.

Anyway, I really do have to go, but, I want to repeat that I have NOT YET read this entire thread, just John’s front-page and a couple of other comments. So I’ll just add for now:

PHELPS, I actually think you may have hit on a brilliant idea. More later.

AZIZ: Hell yeah I want to hear about it. Email me and John, plz.

And, I AM going to read the rest of this thread in the next day or so. It’s just something that requires a lot of my attention that I don’t have to give right now, and "I didn’t really read or think about what you had to say but thanks anyway" is just damn well RUDE. ;-)

So, I’ll be back.

Later taters.

16 Mc Kiernan 12.16.08 at 9:18 pm

Immortality in the human realm requires that the currently living entity is able to control the death process within each specific life to engender rebirth for the next human life.  

The real question is whether that process is a natural result discernible through scientific analysis available to medical testing, dna results or the erudition of Dr. Kelso.  

The genuine answer abides within the mind of
Zsallia, not Dr. Kelso nor the parasite on the plasma screen.

This is all fiction, right ?

On the other hand maybe Dr, Kelso needs a metaphysician or more classes in neuroscience.

17 Dean Esmay 12.16.08 at 11:14 pm

McK: Yes, it’s all fiction, and your thoughts are valuable on that score.

But otherwise, holy shit, I think maybe Phelps and Trudy may have (just maybe) pointed to the right answer. I just tried to talk to John about it but he was just getting in bed and damn if I’ll bother him on that. The man has to get up for work in the morning, and besides, I may be wrong.

And I really want to hear Dr. Poonawalla’s thoughts, and just emailed him on it.
What a great thread. I’m glad John started it. This really really may help guys. And further thoughts are still absolutely solicited.

(DAMN I love the blogosphere!)

18 CosmicConservative 12.17.08 at 7:26 pm

Dean:

I can’t say I fully understand the scope of what you are talking about, but if you are trying to come up with a definitive means of demonstrating that a human being is artificial, as opposed to organically generated, then here are a couple of things  to think about.

Human DNA, like all DNA in all organisms, is a hodge-podge of genes and genetic sequences, some of which are dormant, some of which are canceled out by other portions, and some of which are actually detrimental to the organism.

If I were to design a "super human" from the DNA up, I would remove some of those redundant, unnecessary or (particularly) potentially dangerous sequences. If an examination of someone’s DNA were to show that those specific parts were missing, that would be a powerful indicator of artificiality. I would specifically look for areas of known genetic weakness where DNA is known to be prone to error leading to genetic diseases.

Also, if I were to design DNA from the ground up, I would probably succumb to the temptation to "sign" my work. It would probably be pretty easy to insert a section of nonfunctioning DNA which had an encoded "signature" in it. By comparing the artificial DNA to actual DNA, this sequence could potentially be isolated and eventually decoded.

Finally, I would expect a designed organism to have some specific enhancements over organically evolved ones, particularly in areas where evolution has created difficulties for itself. Perhaps the tendons of the individual would have carbon-filaments woven into the fiber. I would look closely at mitochondrial DNA for specific design improvements since that’s the basic energy mechanism for the cell. This not only would provide a "signature" proving artificiality, but could also explain any "super human" abilties of the artificial human.

Or you could just do a BladeRunner and have a serial number embedded in every cell in the body.

CosmicConservative’s last blog post..WoW update?. # whatever?

19 J.A. Eddy 12.17.08 at 8:50 pm

CC-

Interesting thoughts, but that’s precisely what we’re trying to avoid. Zsallia is a human being, she’s just been modified resulting immortality and the ability to recover from wounds that would kill an ordinary person. Her abilities fall within the laws of physics- the regenerative process consumes her and her appetite (once she regains consciousness, as in the book) goes wild as she consumes whatever she has to to complete the healing process.

I don’t see a signature being in the works, given the how’s and why’s we won’t discuss here. If you look at the two chapters referenced in the post you’ll see the revelation that she is a human being hits her very, very hard- if she were told she was an artificial creature she’d actually probably be happier, at least at first. What Dean needs is something that makes it undeniable that Zsallia is human, and that her immortality is artificial. What I need is a way to deliver that without being too cliche about it and leaving at list a sliver of doubt for those readers who need it (including myslef). It’s a very thin line.

20 CosmicConservative 12.17.08 at 9:05 pm

OK, so what  you do is you compare her somatic to her genetic DNA and demonstrate that the somatic has been modified, while her genetic DNA has not.

In other words, her egg-producing genes would not benefit from the enhancements, while her body would. This means that her enhancements, including her immortality, would not breed true. The fact that her reproductive DNA was not modified would prove she was originally human.

I believe that this sort of somatic genetic engineering is feasible since I know that there are somatic mutations that do not affect the reproductive DNA, and as such do not breed true.

CosmicConservative’s last blog post..WoW update?. # whatever?

21 J.A. Eddy 12.17.08 at 9:53 pm

That’s not such a bad idea, though it must be mentioned that Zsallia is barren and has never (to her knowledge) had any children of her own. This is more due to the way her hormonal balance is maintained than any failure in her reproductive system.

For any interested, a very quick and dirty biography of Zsallia can be found right here.

22 CosmicConservative 12.17.08 at 10:21 pm

That fits nicely with the approach I’ve suggested. As such she would never have had reason to investigate her own reproductive cells. You could even suggest that this hormonal imbalance is critical to her "abilties" and the loss of reproductive function is a feature, not a bug. In other words, it was designed into her for a purpose.

CosmicConservative’s last blog post..WoW update?. # whatever?

23 jaymaster 12.18.08 at 12:45 am

"Zsallia is barren and has never (to her knowledge) had any children of her own"

That’s easy for a man to say….

24 J.A. Eddy 12.18.08 at 12:23 pm

I just want to thank everyone who has commented here or corresponded via e-mail. You’ve proven yet again what a diverse and thoughtful commentariat surrounds this blog.  You’ve all given us things to chew on and we appreciate it very, very much.

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